PANORAMICS - A Vision
Re-imagining conversations in science
a pan-Canadian working cluster for spatial & single cell multi-omics analyses
IN-PERSON : COBE (Computational and Bench Scientist Ecosystem)
Tue, May 30
|MS 3278
Time & Location
May 30, 2023, 12:00 p.m. – 2:00 p.m. EDT
MS 3278, Medical Sciences Building, 1 King's College Cir, Toronto, ON M5S 1A8, Canada
About the event
The PANORAMIC TUTORIAL-LECTURE SERIES for single cell RNA sequencing
Chapter 1 | The Biologist toolkit for single cell & bulk computational analysis
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COBE (Computational and Bench Scientist Ecosystem)
In this seminar, Paul Brogee (Computational Biology & Medicine Program) and Emily So (Haibe-Kains Lab, Code Ocean) will provide an introduction to the Computational & Bench Scientist Ecosystem (CoBE), a software pipeline search and recommendation system that allows users to quickly identify the tools they need for their -omics analyses. Join Paul and Emily as they walk through how to find the tools you need based on your data type and desired output, and how to execute several key single-cell analysis pipelines (scRNA-seq and scATAC-seq) on Princess Margaret’s Code Ocean Virtual Private Cloud (VPC). Attendees will leave with an understanding of the CoBE search system, the Code Ocean VPC, and the easily reproducible single-cell pipelines therein.