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Tue, Jul 09


In-person - TORONTO, virtual - ZOOM

Introductory Spatial Omics Analysis

Brain Single Cell Initiative, Panoramics - A Vision & are proud to bring you this event in summer.

Time & Location

Jul 09, 2024, 8:00 a.m. EDT – Jul 10, 2024, 5:00 p.m. EDT

In-person - TORONTO, virtual - ZOOM, Toronto, ON, Canada

About the event

This workshop will introduce the participant to single molecular spatial transcriptome and image analysis in a supportive environment with practical, hands-on sessions. The focus will be on analysis of Xenium brain datasets, but learnings will be applicable to other research programs and spatial single molecular transcriptomics. By the end, participants will be able to:

- Understand lab practices to plan optimal single molecular spatial experiments - Design gene panels in line with panel design best practices - Perform data clean-up and pre-processing - Understand and implement different non-spatial and spatial methods of analysis 

- Apply a basic non-segmentation/segmentation method to their analysis

- Plan spatial experiments from start through analysis

Applicants are invited to apply through the portal (provided here)


About This Collaboration

The Brain Single Cell Initiative is making single-cell and spatial genomics technology, along with scientific and bioinformatics support, available to brain researchers through the Princess Margaret Genomics Centre.  Panoramics – A Vision is a pan-Canadian working cluster for spatial and single cell multi-omics analyses. is the home of the Canadian Bioinformatics Workshops, Canada's leading provider of short-form training in computational biology and bioinformatics.

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